ChloroScan: A metagenomic workflow to recover chloroplast genomes.

Author: Yuhao Tong (The University of Melbourne)

example workflow ../_images/Flow_ChloroScan.drawio.png

A snakemake workflow for MMA metagenomics for recovering chloroplast genomes.

This workflow is designed to recover chloroplast genomes from metagenomic data.

Installation

To install the workflow, use pip3:

pip3 install chloroscan