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ChloroScan: A metagenomic workflow to recover chloroplast genomes.
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Author: Yuhao Tong (The University of Melbourne)

.. image:: https://github.com/Andyargueasae/chloroscan/badge.svg
   :target: https://github.com/Andyargueasae/chloroscan/badge.svg
   :alt: example workflow

.. image:: ../_static/images/Flow_ChloroScan.drawio.png

A snakemake workflow for MMA metagenomics for recovering chloroplast genomes.
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This workflow is designed to recover chloroplast genomes from metagenomic data.

Installation
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To install the workflow, use pip3:

.. code-block:: bash

    pip3 install chloroscan