Welcome to chloroscan’s documentation!

Contents:

• ChloroScan: A metagenomic workflow to recover chloroplast genomes.
  • A snakemake workflow for MMA metagenomics for recovering chloroplast genomes.
  • Installation
• Beginner’s tutorial
  • Data Input and configuration
  • Explaining the non-required arguments
• Command Line Interface
  • run
  • config
  • env
  • info
  • profile
  • script
  • github
  • docs
• Credits

Indices and tables

• Index

• Module Index

• Search Page